Sunguk Shin, Ph.D.
CONTACT INFORMATION
Postdoctoral Researcher
Translational Genome Informatics Laboratory
Severance Biomedical Science Institute
Yonsei University College of Medicine
ABMRC #511, 50-1 Yonsei-ro, Seodaemun-gu,
Seoul 03722, South Korea.
Office: +82-2-2228-0914
RESEARCH AREAS
Genome analysis, Bioinformatics, NGS analysis method development
EDUCATION
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Ph.D. in Environmental Engineering, Yonsei University, Seoul, Korea.
Dissertation: Accuracy Improvement of Next-generation Sequencing Data through Characterization and Correction of Sequence-specific Errors
Advisor: Prof. Joonhong Park
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M.S. in Bioinformatics, Seoul National University, Seoul, Korea.
Thesis: A statistical analysis of SNPs, in-dels, and their flanking sequences in human genomic regions
Advisor: Prof. Byung-Dong Kim
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B.S. in Biological Engineering, Ajou University, Suwon, Korea.
ACADEMIC EXPERIENCES
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Postdoctoral Researcher, Rural development administration, Jeonju, Korea.
Apr. 2015 - Jan. 2016.
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Visiting Researcher, Ribosomal Database Project, Michigan State University, MI USA.
Aug. 2011 - Sep. 2011.
PUBLICATIONS
JOURNAL (Peer Reviewed)
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Shin, Sunguk, and Joonhong Park. "Characterization of sequence-specific errors in various next-generation sequencing systems." Molecular BioSystems (2016).
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Shin, Sunguk, and Joonhong Park. "Correction of sequence-dependent ambiguous bases (Ns) from the 454 pyrosequencing system." Nucleic acids research (2014): gku070
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Shin, Sunguk, et al. "Regional effects on chimera formation in 454 pyrosequenced amplicons from a mock community." Journal of Microbiology 52.7 (2014): 566-573
Conference Proceedings and Presentations (Peer Reviewed)
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Oral presentation, KJT supported by ISME 2014
SKILLS
Omics- data analysis experiences:
Metagenomics, GS FLX sequencing data, Ion Torrent data, Sequence-specific errors
Programming languages:
Perl, C, MATLAB, R
