​​   Genomic Variant Analysis:

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1. Yoo-Jin Ha, ... et al ..., Spina Bifida Sequencing Consortium, Sangwoo Kim*, Joseph G. Gleeson*, The Contribution of De Novo Coding Mutations to Meningomyelocele, Nature 2025, 641:419-426

2. Young-soo Chung†, Seungseok Kang†, Jisu Kim, Sangbo Lee, and Sangwoo Kim*, CLEMENT: Genomic Decomposition and Reconstruction of Non-tumor Subclones, Nucleic Acids Research 2024, 52(14):e62
    

3. Yoo-Jin Ha, Seungseok Kang, Jisoo Kim, Junhan Kim, Se-Young Jo, and Sangwoo Kim*, Comprehensive benchmarking and guidelines of mosaic variant calling strategies, Nature Methods 2023, 20:2058-2067
    

4. Junho Kim, Dachan Kim, Jae Seok Lim, Ju Heon Maeng, Hyeonju Son, Hoon-Chul Kang, Hojung Nam, Jeong Ho Lee* and Sangwoo Kim*, The use of technical replication for detection of low-level somatic mutations in next-generation sequencing, Nature Communications 2019, 10, Article number 1047
    

5. Sangwoo Kim†*, Kyowon Jeong†, Kunal Bhutani, Jeong Ho Lee, Anand Patel, Eric Scott, Hojung Nam, Hayan Lee, Joseph G. Gleeson and Vineet Bafna*, Virmid: accurate detection of somatic mutations with sample impurity inference, Genome Biology 2013, 14:R90
    

   Translational and Clinical Genomics:

 

1. Taek Chung, Seungho Oh, Jeongsoo Won, Jiho Park, Jeong Eun Yoo, Ho Kyoung Hwang, Gi Hong Choi, Chang Moo Kang, Dai Hoon Kim, Sangwoo Kim*, Young Nyun Park*, Genomic and Transcriptomic Signatures of Sequential Carcinogenesis from Papillary Neoplasm to Biliary Tract Cancer, Journal of Hepatology 2025, 83(1):119-130
    

2. Bhumsuk Keam, Min Hee Hong, Seong Hoon Shin, Seong Gu Heo, Ji Eun Kim, Hee Kyung Ahn, Yun-Gyoo Lee, Keon-Uk Park, Tak Yun, Keun-Wook Lee, Sung-Bae Kim, Sang-Cheol Lee, Min Kyung Kim, Sang Hee Cho, So Yeon Oh, Sang-Gon Park, Shinwon Hwang, Byung-Ho Nam, Sangwoo Kim*, Hye Ryun Kim*, Hwan-Jung Yun*, Personalized biomarker-based umbrella trial for patients with recurrent or metastatic head and neck squamous cell carcinoma: KCSG HN 15-16 TRIUMPH trial, Journal of Clinical Oncology 2023 42, 507-517
    

3. Tae-Min Kim, In Seok Yang, Byung-Joon Seung, Sejoon Lee, Dohyun Kim, Yoo-Jin Ha, Mi-kyoung Seo, Ka-Kyung Kim, Hyun Seok Kim, Jae-Ho Cheong, Jung-Hyang Sur, Hojung Nam, and Sangwoo Kim*, Cross-species Oncogenic Signatures of Breast Cancer in Canine Mammary Tumors, Nature Communications 2020 11, article number 3616
    

4. Se-Young Jo†, Eunyoung Kim†, and Sangwoo Kim*, Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis, Genome Biology 2019 (20):231
    

5. Gunho Lee†, Hyang Joo Ryu†, Ji Woon Choi, Hyundeok Kang, Woo Ick Yang, In Seok Yang, Mi-Kyoung Seo, Sangwoo Kim* and Sun Och Yoon*, Characteristic gene alterations in primary gastrointestinal T and NK cell lymphomas, Leukemia 2019, 33, 1797-1832

   Immunological Analysis of Cancer:
 

1. Jung Ho Kim†, Mi-Kyoung Seo†, Ji Ae Lee, Seung-Yeon Yoo, Hyeon Jeong Oh, Hyundeok Kang, Nam-Yun Cho, Jeong Mo Bae, Gyeong Hoon Kang* and Sangwoo Kim*, Genomic and transcriptomic characterization of heterogeneous immune subgroups of microsatellite instability-high colorectal cancers, Journal for immunotherapy of cancer 2021;9;e003414
    

2. Sora Kim†, Han Sang Kim†, Eunyoung Kim, Min Goo Lee, Eui-Cheol Shin, Soonmyung Paik and Sangwoo Kim*, Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information, Annals of Oncology 2018, 29(4):1030-1036