​​   Genomic Variant Analysis:

​​

1. Yoo-Jin Ha, ... et al ..., Spina Bifida Sequencing Consortium, Sangwoo Kim*, Joseph G. Gleeson*, The Contribution of De Novo Coding Mutations to Meningomyelocele, Nature (in press)
    

2. Young-soo Chung†, Seungseok Kang†, Jisu Kim, Sangbo Lee, and Sangwoo Kim*, CLEMENT: Genomic Decomposition and Reconstruction of Non-tumor Subclones, Nucleic Acids Research 2024, 52(14):e62
    

3. Yoo-Jin Ha, Seungseok Kang, Jisoo Kim, Junhan Kim, Se-Young Jo, and Sangwoo Kim*, Comprehensive benchmarking and guidelines of mosaic variant calling strategies, Nature Methods 2023, 20:2058-2067
    

4. Junho Kim, Dachan Kim, Jae Seok Lim, Ju Heon Maeng, Hyeonju Son, Hoon-Chul Kang, Hojung Nam, Jeong Ho Lee* and Sangwoo Kim*, The use of technical replication for detection of low-level somatic mutations in next-generation sequencing, Nature Communications 2019, 10, Article number 1047
    

5. Sangwoo Kim†*, Kyowon Jeong†, Kunal Bhutani, Jeong Ho Lee, Anand Patel, Eric Scott, Hojung Nam, Hayan Lee, Joseph G. Gleeson and Vineet Bafna*, Virmid: accurate detection of somatic mutations with sample impurity inference, Genome Biology 2013, 14:R90
    

   Translational and Clinical Genomics:

 

1. Taek Chung, Seungho Oh, Jeongsoo Won, Jiho Park, Jeong Eun Yoo, Ho Kyoung Hwang, Gi Hong Choi, Chang Moo Kang, Dai Hoon Kim, Sangwoo Kim*, Young Nyun Park*, Genomic and Transcriptomic Signatures of Sequential Carcinogenesis from Papillary Neoplasm to Biliary Tract Cancer, Journal of Hepatology 2025 (in press)
    

2. Bhumsuk Keam, Min Hee Hong, Seong Hoon Shin, Seong Gu Heo, Ji Eun Kim, Hee Kyung Ahn, Yun-Gyoo Lee, Keon-Uk Park, Tak Yun, Keun-Wook Lee, Sung-Bae Kim, Sang-Cheol Lee, Min Kyung Kim, Sang Hee Cho, So Yeon Oh, Sang-Gon Park, Shinwon Hwang, Byung-Ho Nam, Sangwoo Kim*, Hye Ryun Kim*, Hwan-Jung Yun*, Personalized biomarker-based umbrella trial for patients with recurrent or metastatic head and neck squamous cell carcinoma: KCSG HN 15-16 TRIUMPH trial, Journal of Clinical Oncology 2023 42, 507-517
    

3. Tae-Min Kim, In Seok Yang, Byung-Joon Seung, Sejoon Lee, Dohyun Kim, Yoo-Jin Ha, Mi-kyoung Seo, Ka-Kyung Kim, Hyun Seok Kim, Jae-Ho Cheong, Jung-Hyang Sur, Hojung Nam, and Sangwoo Kim*, Cross-species Oncogenic Signatures of Breast Cancer in Canine Mammary Tumors, Nature Communications 2020 11, article number 3616
    

4. Se-Young Jo†, Eunyoung Kim†, and Sangwoo Kim*, Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis, Genome Biology 2019 (20):231
    

5. Gunho Lee†, Hyang Joo Ryu†, Ji Woon Choi, Hyundeok Kang, Woo Ick Yang, In Seok Yang, Mi-Kyoung Seo, Sangwoo Kim* and Sun Och Yoon*, Characteristic gene alterations in primary gastrointestinal T and NK cell lymphomas, Leukemia 2019, 33, 1797-1832

   Immunological Analysis of Cancer:
 

1. Jung Ho Kim†, Mi-Kyoung Seo†, Ji Ae Lee, Seung-Yeon Yoo, Hyeon Jeong Oh, Hyundeok Kang, Nam-Yun Cho, Jeong Mo Bae, Gyeong Hoon Kang* and Sangwoo Kim*, Genomic and transcriptomic characterization of heterogeneous immune subgroups of microsatellite instability-high colorectal cancers, Journal for immunotherapy of cancer 2021;9;e003414
    

2. Sora Kim†, Han Sang Kim†, Eunyoung Kim, Min Goo Lee, Eui-Cheol Shin, Soonmyung Paik and Sangwoo Kim*, Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information, Annals of Oncology 2018, 29(4):1030-1036