2024:
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1. Kim JH†*, Hong J†, Lee JA, Jung M, Choi E, Cho N-Y, Kang GH, Kim S*, Immune microenvironmental heterogeneity according to tumor DNA methylation phenotypes in microsatellite instability-high colorectal cancers, Cancer Immunology, Immunotherapy 2024 (accepted for publication)
    

2. Hong MH, Choi YJ, Ahn HK, Lim SM, Keam B, Kim D-W, Kim TM, Youk J, Kim YJ, Hwang S, Kim S, Kim JW, Kim HR, Kang JH, Lazertinib in EGFR-Variant Non–Small Cell Lung Cancer With CNS Failure to Prior EGFR Tyrosine Kinase Inhibitors, JAMA Oncology 2024, ePub 
    

3. Jung D†*, Seo M-K†, Jo JH†, Kim K, Kim C, Kang H, Park SB, Lee HS, Kim S*, Song SY*, PUM1-TRAF3 fusion protein activates non-canonical NF-κB signaling via rescued NIK in biliary tract cancer, npj Precision Oncology 2024, 8, article number 170
    

4. Jo S-Y†, Lee KD†, Won J, Park J, Kweon T, Jo S, Sohn J, Kim S-I, Kim S*, Park HS*, Reversion of pathogenic BRCA1 L1780P mutation confers resistance to PARP and ATM inhibitor in breast cancer, iScience 2024 28(8)
    

5. Chung Y-s†, Kang S†, Kim J, Lee S, Kim S*, CLEMENT: Genomic Decomposition and Reconstruction of Non-tumor Subclones, Nucleic Acids Research 2024 52(14):e62 
   - Media covered in BRIC (한빛사)
    

6. Kim IB, Kim M-H, Jung S, Kim WK, Lee J, Ju YS, Webster MJ, Kim S, Kim JH, Kim HJ, Kim J*, Kim S*, Lee JH*, Low-level brain somatic mutations in exonic regions are collectively implicated in autism with germline mutations in autism risk genes, Experimental & Molecular Medicine 2024 ePub 
   - Media covered in BRIC (한빛사)
    

7. Hong J, Choi E, Kim D, Seo M-K, Kang H, Park B, Kim S*, Immunological subtyping of salivary gland cancer identifies histological origin-specific tumor immune microenvironment, npj Precision Oncology 2024 8, Article number 15
   
   2023:
    

8. Ha Y-J, Kang S, Kim J, Kim J, Jo S-Y, Kim S*, Comprehensive benchmarking and guidelines of mosaic variant calling strategies, Nature Methods 2023, 20:2058-2067
   - Media covered in BRIC (한빛사)
   - Media covered in SeoulEconomy, KyungHyang, MedicalToday, DailyMedi, eNewsToday and 7 more news outlets
    

9. Yang IS†, Jang I†, Yang JO, Choi J, Kim M-S, Kim K-K, Seung B-J, Cheong J-H, Sur J-H, Nam H, Lee B*, Kim J*, Kim S*, CanISO: a database of genomic and transcriptomic variations in domestic dog (Canis lupus familiaris), BMC Genomics 2023, 24(613)
   - Database available at: https://www.kobic.re.kr/caniso/
    

10. Yun E-J, Kim D, Kim S, Hsieh J-T, Baek ST*, Targeting Wnt/β-catenin-mediated upregulation of oncogenic NLGN3 suppresses cancer stem cells in glioblastoma, Cell Death & Disease 2023, 14, article number 423
     

11. Keam B, Hong MH, Shin SH, Heo SG, Kim JE, Ahn HK, Lee Y-G, Park K-U, Yun T, Lee K-W, Kim S-B, Lee S-C, Kim MK, Cho SH, Oh SY, Park S-G, Hwang S, Nam B-H, Kim S*, Kim HR*, Yun H-H*, Personalized biomarker-based umbrella trial for patients with recurrent or metastatic head and neck squamous cell carcinoma: KCSG HN 15-16 TRIUMPH trial, Journal of Clinical Oncology 2023 10;42(5):507-517
    - Media covered in BRIC (한빛사)
    - Media covered in Medipana, Korea Healthlog, kMedInfo, and MedicalObserver
     

12. Kim MH, Kim GM, Ahn JM, Ryu W-J, Kim S-G, Kim JH, Kim TY, Han HJ, Kim JY, Park HS, Park S, Park BW, Kim SI, Jeong J, Lee J, Paik S, Kim S, Jung KH, Cho EH*, Shon J*, Copy number aberrations in ctDNA enables prognosis prediction and molecular characterization of breast cancer, Journal of the National Cancer Institute 2023, 115(9), 1036-1049
     

13. Kim SH, Kwon SS, Park MR, Lee HA, Kim JH, Cha Ji, Kim S, Baek ST, Kim SH, Lee JS, Kim HD, Choi JR, Lee S-T, Kang H-C*, Detecting low-variant allele frequency mosaic pathogenic variants of NF1, TSC2, and AKT3 genes from blood in patients with neurodevelopmental disorders, The Journal of Molecular Diagnostics 2023, 25(8), 583-591
     

14. Jo S-Y†, Hong N†, Lee S, Jeong JJ, Won J, Park J, Kim GJ, Kim SK, Kim S*, Rhee Y*, Genomic and transcriptomic profiling reveal molecular characteristics of parathyroid carcinoma, Experimental & Molecular Medicine 2023, 55, 886-897 
    - Media covered in BRIC (한빛사)
    
    2022:
     

15. Kim JH†, Hwang S†, Son H, Kim D, Kim IB, Kim M-H, Sim NS, Kim D-S, Ha Y-J, Lee J, Kang H-C, Lee JH*, Kim S*, Analysis of low-level somatic mosaicism reveals stage- and tissue-specific mutational features in human development, PLoS Genetics 2022, 18(9):e1010404
     

16. Kang H†, Seo M-K†, Park B, Yoon SO, Koh YW, Kim D*, Kim S*, Characterizing intrinsic molecular features of the immune subtypes of salivary mucoepidermoid carcinoma, Translational Oncology 2022, 24, 101496
     

17. Park B, Heo S-J, Lee YJ, Seo M-K, Hong J, Shin E-C, Jung I, Kim S*, HLA-I-restricted CD8+ T cell immunity may accelerate tumorigenesis in conjunction with VHL inactivation, iScience 2022, 25;6, 104467
     

18. Cha Y-J†, Jeon S-B†, Oh J†, Seung-Tae Lee, Kim S, Kim H, Choi J, Choi H-K, Won D, Choi JR, Kim S-J, Park SW*, Kang SM*, and Lee S-H*, Derivation of YCMi005-A, a human-induced pluripotent stem cell line, from a patient with dilated cardiomyopathy carrying missense variant in TPM1 (p. Glu192Lys), Stem Cell Research 2022, 60, 102707
     

19. Lee S, Seung B-J, Yang IS, Lee J, Ha T, Park H-M, Cheong J-H, Kim S, Sur J-H, Hwang G-S* & Nam H*, 1H NMR based urinary metabolites profiling dataset of canine mammary tumors, Scientific Data 2022, 9, article number 132
     

20. Seo M-K, Kang H, Kim S*, Tumor microenvironment-aware, single-transcriptome prediction of microsatellite instability in colorectal cancer using meta-analysis, Scientific Reports 2022, 12, article number 6238
     

21. Ha Y-J†, Oh MJ†, Kim J, Kim J, Kang S, Minna JD, Kim HS*, Kim S*, Establishment of reference standards for multifaceted mosaic variant analysis, Scientific Data 2022, 9, article number 35
    - Reference standard data available at GitHub page
     

22. Yang Y, Kim E, Chung T, Kim S*, Insignificant effects of loss of heterozygosity in human leukocyte antigen on the efficacy of immune checkpoint blockade treatment, Genes and Genomics 2022, 44, 595-515
     

23. Choi SJ, Kim D-U, Noh JY, Kim S, Park S-H, Jeong HW, Shin E-C*, T cell epiotpes in SARS-CoV-2 proteins are substantially conserved in the Omicron variant, Cellular & Molecular Immunology 2022, 19, 447-448
    
    2021:
     

24. Kim JH†, Seo M-K†, Lee JA, Yoo S-Y, Oh HJ, Kang H, Cho N-Y, Bae JM, Kang GH*, Kim S*, Genomic and transcriptomic characterization of heterogeneous immune subgroups of microsatellite instability-high colorectal cancers, Journal for immunotherapy of cancer 2021;9;e003414
    - Media covered in BRIC (한빛사)
    - Media covered in Donga Science, Herald Economy, Asia Economy, News1, Digital Times, and 4 others.
     

25. Oh J, Lee S-H, Choi J, Choi JR, Kim S, Cha Y-J, Choi H-K, Won D, Yoon H-G, Park SW, Kang S-M*, Lee S-T*, Lee S-H*, Establishment of a novel human iPSC line (YCMi003-A) from a patient with dilated cardiomyopathy carrying genetic variant LMNA p.Asp364His, Stem Cell Research 2021, 56, 102508
     

26. Kim JH*, Hong JH, Choi Y-L*, Lee JA, Seo M-K, Lee M-S, An SB, Sung MJ, Cho N-Y, Kim S-S, Shin YK, Kim S, Kang GH, NTRK oncogenic fusions are exclusively associated with the serrated neoplasia pathway in the colorectum and begin to occur in sessile serrated lesions, The Journal of Pathology 2021, 255(4):399-411
     

27. Kim KW, Kim DY, Yoon D, Kim K-K, Jang H, Schoettler N, Kim EG, Kim MN, Hong JY, Lee J-K, Kim S, Ober C, Gee HY*, Sohn MH*, Genome-wide association study identifies TNFSF15 associated with childhood asthma, Allergy 2021, 00:1-12
     

28. Keam B, Park JY, Kim J, Kim GD, Yu Y, Cho SH, Kim S, Ahn HK, Chun SH, Kwon JH, Yun T, Kim J-W, Kim JE, Ahn M-J, Kim J-H, Yun HJ*, Comprehensive Analysis of Mutation-Based and Expressed Genes-Based Pathways in Head and Neck Squamous Cell Carcinoma, Processes 2021, 9(5), 792
     

29. Lim SM†, Kim E†, Jung KH†, Kim S, Koo JS, Kim SI, Park S, Park HS, Park BW, Cho YU, Kim JY, Paik S, Kwon N-J, Kim GM, Kim JH, Kim MH, Jeon MK, Kim S*, Sohn J*, Genomic landscape of extraordinary responses in metastatic breast cancer, Communications Biology 2021, 4, Article number 449
     

30. Yang IS†, Bae SW†, Park B, Kim S*, Development of a program for in silico optimized selection of oligonucleotide-based molecular barcodes, PLoS ONE 2021, 16(2):e0246354
     

31. Lee HS†, Kim E†, Lee J, Park SJ, Hwang HK, Park CH, Jo S-Y, Kang CM, Hong S-M, Kang H, Jo JH, Cho IR, Chung MJ, Park JY, Park SW, Song SY, Han JM, Kim S*, Bang S*, Profiling of conditionally reprogrammed cell lines for in vitro chemotherapy response prediction of pancreatic cancer, EBioMedicine 2021, 65:103218
    
    2020:
     

32. Seo M-K, Paik S*, Kim S*. An Improved, Assay Platform Agnostic, Absolute Single Sample Breast Cancer Subtype Classifier. Cancers 2020,12(12), 3506
     

33. Yun E-J, Kim S, Hsieh J-T, Baek ST*, Wnt/β-catenin signaling pathway induces autophagy-mediated temozolomide-resistance in human glioblastoma. Cell Death & Disease 2020, 11. article number 771
     

34. Kim T-M, Yang IS, Seung B-J, Lee S, Kim D, Ha Y-J, Seo M-K, Kim K-K, Kim HS, Cheng J-H, Sur J-H, Nam H, Kim S*. Cross-species Oncogenic Signatures of Breast Cancer in Canine Mammary Tumors. Nature Communications 2020 11, article number 3616
    - Media covered in BRIC (한빛사)
    - Covered in 14 major media (online collection) (2020/07/17)
     

35. Chang H, Lee Y-G, Ko YH, Cho JH, Choi J-K, Park KU, Kang EJ, Lee K-W, Lim SM, Kim J-S, Lee HW, Kim MK, Hwang IG, Kim S, Nam B-H, Kim HR*, Prognostic value of CD200R1 mRNA expression in head and neck squamous cell carcinoma. Cancers 2020, 12(7), 1777
     

36. Kim MH, Kim J-H, Lee JM, Choi JW, Jung D, Cho H, Kang H, Hong MH, Heo SJ, Kim SH, Choi EC, Kim DH, Park YM, Kim S, Yoon SO, Koh YW, Cho BC, Kim HR*, Molecular subtypes of oropharyngeal cancer show distinct immune microenvironment related with immune checkpoint blockade response. British Journal of Cancer 2020, 122:1649-1660
     

37. Yun Y†, Hong S-A†, Kim K-K, Baek D, Lee D, Londhe AM, Lee M, Yu J, Mceachin ZT, Bowser R, Cho S-R, Kim J, Pae AN, Cheong E, Kim S, Boulis NM, Bae S*, Ha Y*. CRISPR-mediated gene correction links the ATP7A M1311V mutations with amyotrophic lateral sclerosis pathogenesis in one individual sequencing. Communications Biology 2020, 3, Article number 33 
     

38. Kim BM, Hong SR, Chun H, Kim S, Shin K-J*. Comparison of whole mitochondrial genome variants between hair shafts and reference samples using massively parallel sequencing. International Journal of Legal Medicine 2020, 134:853–861
    
    2019:
     

39. Chun YJ, Choi JW, Hong MH, Jung D, Son H, Cho EK, Min YJ, Kim S-W, Park K, Lee SS, Kim S*, Kim HR*, and Byung Chul Cho*. Molecular characterization of lung adenocarcinoma from Korean patients using next generation sequencing. PLoS ONE 2019 14(11):e0224379
     

40. Jo S-Y†, Kim E†, Kim S*. Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis. Genome Biology 2019 (20):231
    - Product available at GitHub and Zenodo
    - Media covered in BRIC (한빛사)
    - Media covered in: Daily Economy, Newsis, Asian Economy, Medical Today, iNews, Nocut News (2019/11/12)
     

41. Kim K-K†, Seung BJ†, Kim D†, Park H-M, Lee S, Song D-W, Lee G, Cheong J-H, Nam H*, Sur J-H*, Kim S*. Whole-exome and whole-transcriptome sequencing of canine mammary gland tumors. Scientific Data 2019, 6:147
     

42. Park JS†, Lee J†, Jung ES, Kim M-h, Kim IB, Son H, Kim S, Kim S, Park YM, Mook-Jung I, Yu SJ*, Lee JH*. Brain somatic mutations observed in Alzheimer's disease associated with aging and dysregulation of tau phosphorylation. Nature Communications 2019,  10, Article number 3090
     

43. Chun H and Kim S*. BAMixChecker: an automated checkup tool for matched sample pairs in NGS cohort. Bioinformatics 2019, 35(22):4806-4808
     

44. Ryu W-J, Lee JE, Cho Y-H, Lee G, Seo M-K, Lee S-K, Hwang J-H, Min DS, Noh SH, Paik S, Kim S, Cheong J-H*, Choi K-Y*. A therapeutic Strategy for chemotherapy-resistant gastric cancer via destabilization of both b-catenin and RAS. Cancers, 2019(11):4, 496
     

45. Kim J, Kim D, Lim JS, Maeng JH, Son H, Kang H-C, Nam H, Lee JH*, Kim S*, The use of technical replication for detection of low-level somatic mutations in next-generation sequencing, Nature Communications 2019, 10, Article number 1047, 
    - Software available at SourceForge
    - Media covered in BRIC (한빛사)
    - Media covered in: Medical Tribune, Bridge Economy, Medipana News (2019/03/18)
    - Selected as Top 5 Biomedical Research of Korea in 2019
     

46. Kim EK, Kim KA, Lee CY, Kim S, Chang S, Cho BC, Shim HS*, Molecular Diagnostic Assays and Clinicopathologic Implication of MET Exon 14 Skipping Mutation in Non-small-cell Lung Cancer, Clinical Lung Cancer, 2019, 20(1):e123-32 
     

47. Lee G†, Ryu HJ†, Choi JW, Kang H, Yang WI, Yang IS, Seo M-K, Kim S*, Yoon SO*, Characteristic gene alterations in primary gastrointestinal T and NK cell lymphomas, Leukemia 2019, 33, 1797-1832
    - Media covered in BRIC (한빛사)
     

48. Lim SM†, Cho SH†, Hwang IG†, et al, Yun HJ*, Kim S*, Kim HR*, Investigating the feasibility of targeted next-generation sequencing to guide the treatment of head and neck squamous cell carcinoma, Cancer Research and Treatment 2019:51(1):300-312
    
    2018:
     

49. Sim NS, Seo Y, Lim JS, Kim WK, Son H, Kim HD, Kim S, An HJ, Kang H-C, Kim SH, Kim D-S, Lee JH, Brain somatic mutations in SLC35A2 cause intractable epilepsy with aberrant N-glycosylation, Neurology Genetics 2018, 4:e294
     

50. Shin S, Lee H, Son H, Paik S, Kim S*, AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing, Bioinformatics 2018, 34(7):1232-1234
    - Software available at https://sourceforge.net/projects/airvf/
     

51. Ann S-j†, Kim K-K†, Cheon EJ, Noh H-M, Park S, Kang S-M, Kim S*, Lee SH*, Palmitate and Minimally-Oxidized Low-Density Lipoprotein Additively Promotes Macrophage Activation via TLR4-Dependent and -Independent Pathways, PLoS ONE 2018,13(3): e0193649
     

52. Ko A, Youn SE, Kim SH, Lee JS, Kim S, Choi JR, Kim HD, Lee S-T, Kang H-C*, Targeted gene panel and genotype-phenotype correlation in children with developmental and epileptic encephalopathy, Epilepsy Research 2018, 141:48-55
     

53. Kim S†, Kim HS†, Kim E, Lee MG, Shin E-C, Paik S, Kim S*, Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information, Annals of Oncology 2018, 29(4):1030-1036
    - Media covered in BRIC (한빛사)
    - Software available at https://sourceforge.net/projects/neopepsee/
    - Media covered in: Yonhap News, Daily Economy, Chosun Biz, Digital Times, Medical Today, Nocut News (2018/02/12)
    - Discussed in Editorial:
      A C Ekulund and Z Szallasi, "Computational prediction of neoantigens: do we need more data or new approaches?", Annals of Oncology 2018.
     

54. Yang IS and Kim S*, Isoform specific gene expression analysis of KRAS in the prognosis of lung adenocarcinoma patients, BMC Bioinformatics 2018, 19(Supp l1):40
    
    2017:
     

55. Son H, Kang H, Kim HS, Kim S*, Somatic mutation driven codon transition bias in human cancer, Scientific Reports 2017, 7:14204, 
     

56. Lee C-k†, Kim S†, Lee JS, Lee JE, Kim SM, Yang IS, Kim HR, Lee JH, Kim S*, Cho BC*, Next-generation sequencing reveals novel resistance mechanisms and molecular heterogeneity in EGFR-mutant non-small cell lung cancer with acquired resistance to EGFR-TKIs, Lung Cancer 2017, 113:106-114
     

57. Kim S and Nam H*, In Silico Simulation of Signal Cascades in Biomedical Networks Based on the Production Rule System, Lecture Notes in Computer Science, vol 10330. Springer, Cham
     

58. Lim JS, Gopalappa R, Kim SH, Ramakrishna S, Lee M, Kim W-i, Kim J, Park SM, Lee J, Oh J-H, Kim HD, Park C-H, Lee JS, Kim S, Kim DS, Han JM, Kang H-C*, Kim H*, Lee JH*, Somatic Mutations in TSC1 and TSC2 cause focal cortical dysplasia, The American Journal of Human Genetics 2017, 100(3):454-472
    
    2016:
     

59. Yang IS, Son H, Kim S, Kim S*, ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer, BMC Genomics 2016, 17(1):1-14
    - Database available at http://wiki.tgilab.org/isoexpresso/
     

60. Kim J, Maeng JH, Lim JS, Son H, Lee J, Lee JH, Kim S*, Vecuum: identification and filtration of false somatic variants caused by vector contamination, Bioinformatics 2016, 32(20):3072-3080
    - Software available at https://sourceforge.net/projects/vecuum/
    - Media covered in BRIC (한빛사)
    - Article recommended  by F1000
    - This is a very interesting paper that presents software to identify vector-contamination by inserts that are variable, not just the usual contamination by known vectors of fixed sequence. The background is that when a vector gets integrated into a sequence and linearized, the fixed vector part may be adjacent to a variable sequence segment that was put (with different mutations) into the cloning vector. Such variations may be misinterpreted as bona fide low frequency mutations, especially in the setting of cancer sequencing studies that look for low-frequency somatic mutations in bulk samples. Thus, the authors' method can be used to distinguish somatic mutations in the host DNA from variation in the sequencing reagents that get sequenced along with the sample DNA. The general idea of the method is to identify sequence matches to known vectors, using BWA, and then look at the exon junction patterns in the adjacent sequences to see if they are skewed. In this paper, Figure 1 is "worth more than a thousand words" and readers should start at Figure 1 to understand the innovative problem formulation done by the authors.
     

61. Park HS, Lim SM, Kim S, Kim S, Kim HR, Kwack K, Lee MG, Kim J-H, Moon YW*, Pilot Study of a Next-Generation Sequencing-Based Targeted Anticancer Therapy in Refractory Solid Tumor at a Korean Institution, PLoS ONE 2016, 11(4):e0154133
     

62. Choi YY, Lee JE, Kim H, Sim MH, Kim K-K, Lee G, Kim H-I, An JY, Hyung WJ, Kim C-B, Noh SH, Kim S, Cheong J-H*, Establishment and characterisation of patient-derived xenografts as paraclinical models for gastric cancer, Scientific Reports 2016,6:22172
     

63. Huang KK, Jang KW, Kim S, et al, Tan P, Cho BC*, Exome sequencing reveals recurrent REV3L mutations in cisplatin-resistant squamous cell carcinoma of head and neck, Scientific Reports 2016, 6:19552
     

64. Lim SM, Park HS, Kim S, et al, Kang Y-K, Cho BC, Next-generation sequencing reveals somatic mutations that confer exceptional response to everolimus, Oncotarget 2016, 7(9), 10547-56
    
    2015:
     

65. Yang IS and Kim S*, Analysis of Whole Transcriptome Sequencing Data: Workflow and Software, Genomics & Informatics 2015, 13(4) 119-125
     

66. Baek ST, Copeland B, Yun E-J, Kwon S-K, Guemez-Gamboa A, Kim S, Kang H-C, Song S, Mathern G, Gleeson JG*, An AKT-FOXG1-Reelin Network Underlies Defective Migration in Human Focal Malformations of Cortical Development, Nature Medicine 2015, 1445-1454
     

67. Kim J, Kim S, Nam H, Kim S*, Lee D*, SoloDel: A probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data, Bioinformatics 2015, 31(19) 3105-3113
     

68. Yoon S, Jung J, Yu H, Kwon M, Choo S, Park K, Jang D, Kim S*, Lee D*, Context-based resolution of semantic conflicts in biological pathways, BMC Medical Informatics and Decision Making 2015, 15(Suppl 1):S3 
     

69. Jung S, Lee S, Kim S, Nam H*, Identification of Genomic Features in the Classification of Loss- and Gain-of-Function Mutation, BMC Medical Informatics and Decision Making 2015, 15(Suppl 1):S6
     

70. Lim JS, Kim W-i, Kang H-C, Kim SH, Park AH, Park EK, Cho Y-W, Kim S, Kim HM, Kim JA, Kim J, Rhee H, Kang S-G, Kim HD, Kim D, Kim D-S*, Lee JH*, Brain somatic mutations in MTOR cause focal cortical dysplasia type II leading to intractable epilepsy, Nature Medicine 2015, 21 395-400
    
    ~2014:
     

71. Nam H*, Campodonico M, Bordbar A, Hyduke DR, Kim S, Palsson BO*, A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks, PLoS Computational Biology 2014, 10(9): e1003837.
     

72. Kim S†*, Jeong K†, Chutani K, Lee JH, Patel A, Scott E, Nam H, Lee H, Gleeson JG, Bafna V*, Virmid: accurate detection of somatic mutations with sample impurity inference, Genome Biology 2013, 14:R90
    -  Software available at SourceForge Site
    -  Media covered in BRIC (한빛사)
     

73. Kim S*, Medvedev P, Paton TA, Bafna V*, REPREVER: Resolving low-copy duplicated sequences using template driven assembly, Nucleic Acids Research 2013, 41(12):e128
    -  Software available at SourceForge Site
     

74. Kim S*, Jeong K, Bafna V*, Wessim: A whole exome sequencing simulator based on in silico exome capture, Bioinformatics 2013, 29(8) pp.1076~1077. 
    -  Software available at GitHub Site
     

75. Lo C*, Kim S, Zakov S, Bafna V, Evaluating genome architecture of a complex region via generalized bipartite matching, BMC Bioinformatics 2013, 14(Suppl 5):S13.
     

76. Lee JH, Sillhavy JL, Huynh M, Kim S, Dixon-Salazar T, Heiberg A, Scott E, Bafna V, Hill KJ, Collazo A, Funary V, Russ C, Gabriel SB, Mathern GW*, Gleeson JG*, De novo somatic mutations of the PI3K-AKT3-mTOR pathway in hemimegalencephaly, Nature Genetics 2012, 44(8), 941-945.
     

77. Kim S, Nam H, Lee D*, Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer, BMC Systems Biology 2011, 5(Suppl 2):S4
     

78. Hwang S, Kim S, Shin H, Lee D*, Context-dependent transcriptional regulations between signal transduction pathways, BMC Bioinformatics 2011, 12:19
     

79. Kim S and Lee D*, Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases, BMC Bioinformatics 2009, 10(Suppl 3):S2
     

80. Nam H, Ryu T, Lee K, Kim S, Lee D*, Computational Identification of Significantly Regulated Metabolic Reactions by Integration of Data on Enzyme Activity and Gene Expression, Biochemistry and Molecular Biology reports, 2008.08.31; 41(8) pp. 609~614
     

81. Lee D*, Kim S, Kim Y, BioCAD: an information fusion platform for bio-network inference and analysis, BMC Bioinformatics 2007,8(Suppl 9):S2