[New paper] Impact of mouse contamination in genomic profiling of patient-derived models and best pr
Our new paper has been published in Genome Biology.
In this study, we showed the impacts of mouse genome contamination occurring the analysis of human PDM sequencing data, and suggested the best practice for robust analysis.
Sangwoo Kim and Eunyoung Kim initiated the key idea, and Eunyoung Kim prepared the benchmark dataset. Se-Young Jo conducted the main analysis through the study with Sangwoo Kim's supervision.
Jo, S., Kim, E. & Kim, S. Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis. Genome Biol 20, 231 (2019) doi:10.1186/s13059-019-1849-2
![[Media cover] Dr. Junho Kim appeared in BRIC homepage](https://static.wixstatic.com/media/445be0_92e55fd8503243c0b39bd11e32b70c78~mv2.png/v1/fill/w_220,h_123,fp_0.50_0.50,q_95,enc_auto/445be0_92e55fd8503243c0b39bd11e32b70c78~mv2.png)
![[New paper] New model for calling low-level somatic mutations](https://static.wixstatic.com/media/445be0_98fe336b355d4de7969f74b807056e1d~mv2.png/v1/fill/w_220,h_123,fp_0.50_0.50,q_95,enc_auto/445be0_98fe336b355d4de7969f74b807056e1d~mv2.png)
![[Award] Eunyoung Kim won the Academic Award for Excellance](https://static.wixstatic.com/media/445be0_5bb80473629240f7a9cef0a6dc493804~mv2.png/v1/fill/w_74,h_104,fp_0.50_0.50,q_95,enc_auto/445be0_5bb80473629240f7a9cef0a6dc493804~mv2.png)
![[New paper] Immunological subtyping identifies histological origin-specific tumor immune microenvironment](https://static.wixstatic.com/media/445be0_d5872168fb8441b2831df1e940250069~mv2.png/v1/fill/w_74,h_91,fp_0.50_0.50,q_95,enc_auto/445be0_d5872168fb8441b2831df1e940250069~mv2.png)
![[Award] Eunwoo Choi won excellent poster award in KSBI](https://static.wixstatic.com/media/445be0_4165d0eaa6db4ccfbc8c8fd4520271ce~mv2.jpg/v1/fill/w_74,h_55,fp_0.50_0.50,q_90,enc_auto/445be0_4165d0eaa6db4ccfbc8c8fd4520271ce~mv2.jpg)
![[Award] Prof. Sangwoo Kim won the Onbit award from KSBI (Korean Society for Bioinformatics)](https://static.wixstatic.com/media/445be0_79424329e4264c97811ff26a4121a723~mv2.png/v1/fill/w_74,h_59,fp_0.50_0.50,q_95,enc_auto/445be0_79424329e4264c97811ff26a4121a723~mv2.png)
![[Award] Yoo-Jin Ha won BIOINFO 2023 best paper award from Korean society for Bioinformatics (KSBI)](https://static.wixstatic.com/media/445be0_c7f9868b23e4443f875802ab3e7ff7e1~mv2.png/v1/fill/w_74,h_58,fp_0.50_0.50,q_95,enc_auto/445be0_c7f9868b23e4443f875802ab3e7ff7e1~mv2.png)
![[Media cover] Mosaic variant benchmarking paper covered in media](https://static.wixstatic.com/media/445be0_090ff79f2bfb4cb88cb17b3c3f6d259f~mv2.png/v1/fill/w_74,h_72,fp_0.50_0.50,q_95,enc_auto/445be0_090ff79f2bfb4cb88cb17b3c3f6d259f~mv2.png)
![[Media cover] Yoo-Jin Ha appeared in BRIC page](https://static.wixstatic.com/media/445be0_1ea9a262f1f145888a246704823e78dc~mv2.png/v1/fill/w_74,h_69,fp_0.50_0.50,q_95,enc_auto/445be0_1ea9a262f1f145888a246704823e78dc~mv2.png)
![[New paper] A comprehensive benchmark for mosaic variant detection is published!](https://static.wixstatic.com/media/445be0_ed8604a0b85d40ccb5c31850f67f33f1~mv2.png/v1/fill/w_74,h_43,fp_0.50_0.50,q_95,enc_auto/445be0_ed8604a0b85d40ccb5c31850f67f33f1~mv2.png)
![[Award] Yoo-Jin Ha won academic award for highest achievement from Medical Science, Yonsei University, College of Medicine.](https://static.wixstatic.com/media/445be0_a59891bc057544c2913c9f7a2c23bd95~mv2.png/v1/fill/w_74,h_102,fp_0.50_0.50,q_95,enc_auto/445be0_a59891bc057544c2913c9f7a2c23bd95~mv2.png)